2QJ2 Hormone date Jul 06, 2007
title A Mechanistic Basis For Converting A Receptor Tyrosine Kinas To An Antagonist
authors W.D.Tolbert, J.Daugherty, C.F.Gao, Q.Xe, C.Miranti, E.Gherardi, G Woude, H.E.Xu
compound source
Molecule: Hepatocyte Growth Factor
Chain: A, B
Fragment: Residues 28-209
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgf, Hpta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami(De)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet1
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.401 51.805 73.167 90.00 107.87 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand SO4 enzyme
Primary referenceA mechanistic basis for converting a receptor tyrosine kinase agonist to an antagonist., Tolbert WD, Daugherty J, Gao C, Xie Q, Miranti C, Gherardi E, Vande Woude G, Xu HE, Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14592-7. Epub 2007 Sep 5. PMID:17804794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2qj2.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2QJ2
  • CSU: Contacts of Structural Units for 2QJ2
  • Likely Quarternary Molecular Structure file(s) for 2QJ2
  • Structure Factors (224 Kb)
  • Retrieve 2QJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QJ2 from S2C, [Save to disk]
  • Re-refined 2qj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QJ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QJ2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qj2_B] [2qj2_A] [2qj2]
  • SWISS-PROT database: [P14210]
  • Domain organization of [HGF_HUMAN] by SWISSPFAM
  • Domains found in 2QJ2: [KR] [PAN_AP ] by SMART
    • Other resources with information on 2QJ2
  • Community annotation for 2QJ2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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