4KVP Apoptosis date May 22, 2013
title Human P53 Core Domain Mutant V157f
authors B.D.Wallentine, Y.Wang, H.Luecke
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B, C, D
Fragment: P53 Core Domain
Synonym: Antigen Ny-Co-13, Phosphoprotein P53, Tumor Suppre
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: P53, Tp53
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pse420
symmetry Space Group: P 1 21 1
R_factor 0.174 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.656 70.279 83.559 90.00 90.06 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ZN enzyme
note 4KVP supersedes 2QXA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of oncogenic, suppressor and rescued p53 core-domain variants: mechanisms of mutant p53 rescue., Wallentine BD, Wang Y, Tretyachenko-Ladokhina V, Tan M, Senear DF, Luecke H, Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):2146-56. doi:, 10.1107/S0907444913020830. Epub 2013 Sep 20. PMID:24100332
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (4kvp.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (4kvp.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (4kvp.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (4kvp.pdb4.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4KVP
  • CSU: Contacts of Structural Units for 4KVP
  • Structure Factors (2354 Kb)
  • Retrieve 4KVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KVP from S2C, [Save to disk]
  • Re-refined 4kvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KVP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4KVP, from MSDmotif at EBI
  • Fold representative 4kvp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kvp_D] [4kvp_C] [4kvp_A] [4kvp_B] [4kvp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4KVP
  • Community annotation for 4KVP at PDBWiki (http://pdbwiki.org)

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