2VOI	Apoptosis	date	Feb 17, 2008
title	Structure Of Mouse A1 Bound To The Bid Bh3-Domain
authors	C.Smits, P.E.Czabotar, M.G.Hinds, C.L.Day
compound		source
Molecule: Bcl-2-Related Protein A1 Chain: A Fragment: Residues 1-152 Synonym: Protein Bfl-1, Hemopoietic-Specific Early Response Protein, A1-A; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Psjs 1240 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex 6p-3
Molecule: Bh3-Interacting Domain Death Agonist P13 Chain: B Fragment: Bh3-Domain, Residues 76-109 Synonym: Bh3-Interacting Domain Death Agonist, P13 Bid		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
symmetry	Space Group: P 21 21 2	R_factor 0.207 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.737 80.808 32.184 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.1 Å
ligand	CL	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural plasticity underpins promiscuous binding of the prosurvival protein A1., Smits C, Czabotar PE, Hinds MG, Day CL, Structure. 2008 May;16(5):818-29. PMID:18462686

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (2voi.pdb1.gz) 28 Kb LPC: Ligand-Protein Contacts for 2VOI CSU: Contacts of Structural Units for 2VOI Likely Quarternary Molecular Structure file(s) for 2VOI Structure Factors (69 Kb) Retrieve 2VOI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2VOI from S2C, [Save to disk] Re-refined 2voi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2VOI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2VOI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2VOI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2voi_B] [2voi] [2voi_A] SWISS-PROT database: [Q07440] [P70444] Domain organization of [B2LA1_MOUSE] [BID_MOUSE] by SWISSPFAM Domain found in 2VOI: [BCL ] by SMART

Other resources with information on 2VOI

Community annotation for 2VOI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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