2W8F Receptor date Jan 16, 2009
title Aplysia Californica Achbp Bound To In Silico Compound 31
authors C.Ulens, A.Akdemir, A.Jongejan, R.Van Elk, E.Edink, S.Bertrand, A. R.Leurs, A.B.Smit, T.K.Sixma, D.Bertrand, I.J.De Esch
compound source
Molecule: Soluble Acetylcholine Receptor
Chain: A, B, C, D, E, F, G, H, I, J
Fragment: Residues 20-236
 Organism_scientific: Aplysia Californica
Organism_common: California Sea Hare
Organism_taxid: 6500
symmetry Space Group: P 31 2 1
R_factor 0.237 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.800 76.800 725.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BS1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceUse of Acetylcholine Binding Protein in the Search for Novel alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X-ray Analysis (dagger)., Ulens C, Akdemir A, Jongejan A, van Elk R, Bertrand S, Perrakis A, Leurs R, Smit AB, Sixma TK, Bertrand D, de Esch IJ, J Med Chem. 2009 Mar 30. PMID:19331415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (327 Kb) [Save to disk]
  • Biological Unit Coordinates (2w8f.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (2w8f.pdb2.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 2W8F
  • CSU: Contacts of Structural Units for 2W8F
  • Likely Quarternary Molecular Structure file(s) for 2W8F
  • Structure Factors (635 Kb)
  • Retrieve 2W8F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2W8F from S2C, [Save to disk]
  • Re-refined 2w8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2W8F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2W8F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2W8F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2w8f_C] [2w8f_E] [2w8f_I] [2w8f_B] [2w8f_D] [2w8f_A] [2w8f] [2w8f_H] [2w8f_J] [2w8f_G] [2w8f_F]
  • SWISS-PROT database: [Q8WSF8]
  • Domain organization of [Q8WSF8_APLCA] by SWISSPFAM
    • Other resources with information on 2W8F
  • Community annotation for 2W8F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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