4V5C Ribosome date 9-0 20, 1998
authors R.M.Voorhees, A.Weixlbaumer, D.Loakes, A.C.Kelley, V.Ramakri
compound source
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
212.132 450.802 629.616 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V5C supersedes 2WDG, 2WDH, 2WDI, 2WDJ
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


D2, B2


D5, B5


D8, B8


D9, B9


DD, BD


DG, BG


DH, BH


DI, BI


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceInsights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome., Voorhees RM, Weixlbaumer A, Loakes D, Kelley AC, Ramakrishnan V, Nat Struct Mol Biol. 2009 May;16(5):528-33. Epub 2009 Apr 12. PMID:19363482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1193 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5C
  • Structure Factors (9238 Kb)
  • Retrieve 4V5C in mmCIF format [Save to disk]
  • View 4V5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v5c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5c_DP] [4v5c_CS] [4v5c_CA] [4v5c_B3] [4v5c_DF] [4v5c_DH] [4v5c_AH] [4v5c_AI] [4v5c_DS] [4v5c_AV] [4v5c_D2] [4v5c_B9] [4v5c_BO] [4v5c_DA] [4v5c_D6] [4v5c_BH] [4v5c_AG] [4v5c_CG] [4v5c_DC] [4v5c_DT] [4v5c_B0] [4v5c_CF] [4v5c] [4v5c_DB] [4v5c_CI] [4v5c_BQ] [4v5c_BR] [4v5c_DD] [4v5c_DN] [4v5c_AN] [4v5c_CJ] [4v5c_DR] [4v5c_BW] [4v5c_AP] [4v5c_B4] [4v5c_BE] [4v5c_AF] [4v5c_AK] [4v5c_AT] [4v5c_AL] [4v5c_BP] [4v5c_D7] [4v5c_AD] [4v5c_BB] [4v5c_AJ] [4v5c_AE] [4v5c_B5] [4v5c_BS] [4v5c_BZ] [4v5c_CR] [4v5c_CX] [4v5c_B1] [4v5c_CB] [4v5c_DZ] [4v5c_CC] [4v5c_BY] [4v5c_D5] [4v5c_AU] [4v5c_BC] [4v5c_BA] [4v5c_DV] [4v5c_B6] [4v5c_CQ] [4v5c_CN] [4v5c_DO] [4v5c_CE] [4v5c_AY] [4v5c_AB] [4v5c_BI] [4v5c_BT] [4v5c_B2] [4v5c_CL] [4v5c_D0] [4v5c_CP] [4v5c_DI] [4v5c_CW] [4v5c_DU] [4v5c_AR] [4v5c_AQ] [4v5c_DG] [4v5c_DY] [4v5c_AO] [4v5c_CK] [4v5c_D1] [4v5c_DQ] [4v5c_BN] [4v5c_CV] [4v5c_CY] [4v5c_DE] [4v5c_AW] [4v5c_BV] [4v5c_AA] [4v5c_DX] [4v5c_AC] [4v5c_AX] [4v5c_D4] [4v5c_BX] [4v5c_D8] [4v5c_BD] [4v5c_BG] [4v5c_DW] [4v5c_AS] [4v5c_CU] [4v5c_CH] [4v5c_B7] [4v5c_CM] [4v5c_B8] [4v5c_D9] [4v5c_CD] [4v5c_BF] [4v5c_CO] [4v5c_AM] [4v5c_BU] [4v5c_D3] [4v5c_CT]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V5C
  • Community annotation for 4V5C at PDBWiki (http://pdbwiki.org)

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