2WOD	Hydrolase	date	Jul 23, 2009
title	Crystal Structure Of The Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum In Complex Ribsoyllysine
authors	C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom
compound		source
Molecule: Adp-Ribosyl-[Dinitrogen Reductase] Glycohydrolase Chain: A, B Synonym: Dinitrogenase Reductase-Activating Glycohydrolase, Ribosylglycohydrolase; Ec: 3.2.2.24 Engineered: Yes Other_details: Lys B54 Is Mono-Adp-Ribosylated		Organism_scientific: Rhodospirillum Rubrum Organism_taxid: 1085 Strain: S1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Star Expression_system_plasmid: Pgex-6p-2
symmetry	Space Group: P 31 2 1	R_factor 0.197 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.306 77.306 245.593 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	CL, GOL, MN, ZZC	enzyme	Hydrolase E.C.3.2.2.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanism of ADP-ribosylation removal revealed by the structure and ligand complexes of the dimanganese mono-ADP-ribosylhydrolase DraG., Berthold CL, Wang H, Nordlund S, Hogbom M, Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14247-52. Epub 2009 Aug 12. PMID:19706507

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (2wod.pdb1.gz) 47 Kb Biological Unit Coordinates (2wod.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 2WOD CSU: Contacts of Structural Units for 2WOD Structure Factors (2055 Kb) Retrieve 2WOD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2WOD from S2C, [Save to disk] Re-refined 2wod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 2WOD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2WOD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2wod] [2wod_B] [2wod_A] SWISS-PROT database: [P14300] Domain organization of [DRAG_RHORU] by SWISSPFAM

Other resources with information on 2WOD

Community annotation for 2WOD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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