OCA Atlas for 2YAD

2YAD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE

enzyme

note

2YAD is a representative structure

Gene
Ontology

Chain	Function	Process	Component
D, B, E, A, C, F

Primary reference

High-resolution structure of a BRICHOS domain and its implications for anti-amyloid chaperone activity on lung surfactant protein C., Willander H, Askarieh G, Landreh M, Westermark P, Nordling K, Keranen H, Hermansson E, Hamvas A, Nogee LM, Bergman T, Saenz A, Casals C, Aqvist J, Jornvall H, Berglund H, Presto J, Knight SD, Johansson J, Proc Natl Acad Sci U S A. 2012 Feb 2. PMID:22308375

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]

Biological Unit Coordinates (2yad.pdb1.gz) 75 Kb

Biological Unit Coordinates (2yad.pdb2.gz) 78 Kb

LPC: Ligand-Protein Contacts for 2YAD

CSU: Contacts of Structural Units for 2YAD

Structure Factors (1416 Kb)

Retrieve 2YAD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YAD from S2C, [Save to disk]

Re-refined 2yad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YAD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yad] [2yad_A] [2yad_B] [2yad_C] [2yad_D] [2yad_E] [2yad_F]

SWISS-PROT database:

Domains found in 2YAD: [BRICHOS] [SF_P ] by SMART

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