2YV6	Apoptosis	date	Apr 09, 2007
title	Crystal Structure Of Human Bcl-2 Family Protein Bak
authors	H.Wang, S.Kishishita, K.Murayama, C.Takemoto, T.Terada, M.Shirouzu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Bcl-2 Homologous Antagonistkiller Chain: A Fragment: Residues 23-185 Synonym: Ms0836, Apoptosis Regulator Bak, Bcl-2-Like 7 Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cell-Free Protein Synthesis Expression_system_vector_type: Plasmid Expression_system_plasmid: Pk060220-06
symmetry	Space Group: P 65 2 2	R_factor 0.214 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.824 61.824 137.482 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	MSE, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator., Wang H, Takemoto C, Akasaka R, Uchikubo-Kamo T, Kishishita S, Murayama K, Terada T, Chen L, Liu ZJ, Wang BC, Sugano S, Tanaka A, Inoue M, Kigawa T, Shirouzu M, Yokoyama S, J Struct Biol. 2009 Apr;166(1):32-7. Epub 2008 Dec 24. PMID:19135534

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (2yv6.pdb1.gz) 27 Kb LPC: Ligand-Protein Contacts for 2YV6 CSU: Contacts of Structural Units for 2YV6 Likely Quarternary Molecular Structure file(s) for 2YV6 Structure Factors (42 Kb) Retrieve 2YV6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YV6 from S2C, [Save to disk] Re-refined 2yv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YV6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YV6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YV6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yv6_A] [2yv6] SWISS-PROT database: [Q16611] Belongs to the bcl-2 (bcl-2) family according to TCDB. Domain organization of [BAK_HUMAN] by SWISSPFAM Domain found in 2YV6: [BCL ] by SMART

Other resources with information on 2YV6

Community annotation for 2YV6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---