4V4I Ribosome date 7-0 20, 1999
authors A.Korostelev, S.Trakhanov, M.Laurberg, H.F.Noller
compound source
symmetry Space Group: I 4 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
507.810 507.810 689.520 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V4I supersedes 1VSA, 2OW8, 1VS9, 2I1C
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Y


Z


a


b


c


d


e


f


g


h


i


j


k


l


m


n


o


p


q


r


s


t


u


v


Primary referenceCrystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements., Korostelev A, Trakhanov S, Laurberg M, Noller HF, Cell. 2006 Sep 22;126(6):1065-77. Epub 2006 Sep 7. PMID:16962654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1705 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4I
  • Structure Factors (4109 Kb)
  • Retrieve 4V4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4I from S2C, [Save to disk]
  • View 4V4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v4i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4i_F] [4v4i_f] [4v4i_o] [4v4i_H] [4v4i_p] [4v4i_Z] [4v4i_J] [4v4i_r] [4v4i_n] [4v4i_R] [4v4i_z] [4v4i_Y] [4v4i_K] [4v4i_m] [4v4i_l] [4v4i_q] [4v4i_I] [4v4i_y] [4v4i_S] [4v4i_b] [4v4i_s] [4v4i_W] [4v4i_T] [4v4i_v] [4v4i] [4v4i_Q] [4v4i_1] [4v4i_E] [4v4i_e] [4v4i_C] [4v4i_w] [4v4i_P] [4v4i_u] [4v4i_x] [4v4i_t] [4v4i_a] [4v4i_O] [4v4i_B] [4v4i_N] [4v4i_U] [4v4i_h] [4v4i_A] [4v4i_G] [4v4i_M] [4v4i_j] [4v4i_V] [4v4i_D] [4v4i_X] [4v4i_g] [4v4i_i] [4v4i_c] [4v4i_k] [4v4i_L] [4v4i_0] [4v4i_d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4I: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V4I
  • Community annotation for 4V4I at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science