2NTC Crystal Structure of sv40 large T antigen origin binding domain with DNA date
authors Bohm, A., Meinke, G., Bullock, P.A.
compound source
R_Free 0.28692
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
A, B

Primary referenceThe Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA., Meinke G, Phelan P, Moine S, Bochkareva E, Bochkarev A, Bullock PA, Bohm A, PLoS Biol. 2007 Jan 23;5(2):e23. PMID:17253903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2ntc.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 2NTC
  • Likely Quarternary Molecular Structure file(s) for 2NTC
  • Structure Factors (137 Kb)
  • Retrieve 2NTC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NTC from S2C, [Save to disk]
  • Re-refined 2ntc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NTC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NTC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NTC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ntc_A] [2ntc] [2ntc_C] [2ntc_W] [2ntc_B]
  • SWISS-PROT database: [P03070]
  • Domain organization of [LT_SV40] by SWISSPFAM
  • Other resources with information on 2NTC
  • Community annotation for 2NTC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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