2R5Y Structure of Scr/Exd complex bound to a consensus Hox-Exd site date
authors Aggarwal, A.K., Passner, J.M., Jain, R.
compound source
symmetry
R_factor
R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceFunctional specificity of a Hox protein mediated by the recognition of minor groove structure., Joshi R, Passner JM, Rohs R, Jain R, Sosinsky A, Crickmore MA, Jacob V, Aggarwal AK, Honig B, Mann RS, Cell. 2007 Nov 2;131(3):530-43. PMID:17981120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2r5y.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 2R5Y
  • Likely Quarternary Molecular Structure file(s) for 2R5Y
  • Structure Factors (110 Kb)
  • Retrieve 2R5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R5Y from S2C, [Save to disk]
  • Re-refined 2r5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R5Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R5Y, from MSDmotif at EBI
  • Fold representative 2r5y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r5y_D] [2r5y] [2r5y_C] [2r5y_B] [2r5y_A]
  • SWISS-PROT database: [P40427] [P09077]
  • Domain organization of [EXD_DROME] [SCR_DROME] by SWISSPFAM
  • Domain found in 2R5Y: [HOX ] by SMART
  • Other resources with information on 2R5Y
  • Community annotation for 2R5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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