2WJP CRYSTAL STRUCTURE OF MURD LIGASE IN COMPLEX WITH D-GLU CONTAINING RHODANINE INHIBITOR date
authors Tomasic, T., Zidar, N., Sink, R., Kovac, A., Rupnik, V., Turk, S., Contreras-Martel, C., Dessen, A., Blanot, D., Muller-Premru, M., Gobec, S., Zega, A., Peterlin-Masic, L., Kikelj, D.
compound source
symmetry
R_factor
R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand AZI, CL, D17, DMS, KCX, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Novel 5-Benzylidenerhodanine and 5-Benzylidenethiazolidine-2,4-dione Inhibitors of MurD Ligase., Zidar N, Tomasic T, Sink R, Rupnik V, Kovac A, Turk S, Patin D, Blanot D, Contreras Martel C, Dessen A, Muller Premru M, Zega A, Gobec S, Peterlin Masic L, Kikelj D, J Med Chem. 2010 Aug 30. PMID:20804196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (2wjp.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 2WJP
  • CSU: Contacts of Structural Units for 2WJP
  • Structure Factors (546 Kb)
  • Retrieve 2WJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2WJP from S2C, [Save to disk]
  • Re-refined 2wjp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2WJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2WJP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2WJP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2wjp] [2wjp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2WJP
  • Community annotation for 2WJP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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