2XPC Second-generation sulfonamide inhibitors of MurD: Activity optimisation with conformationally rigid analogues of D-glutamic acid date
authors Sosic, I., Barreteau, H., Simcic, M., Sink, R., Cesar, J., Golic-Grdadolnik, S., Contreras-Martel, C., Dessen, A., Amoroso, A., Joris, B., Blanot, D., Gobec, S.
compound source
symmetry
R_factor
R_Free 0.19924
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.49
ligand 051, CL, DMS, KCX, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSecond-generation sulfonamide inhibitors of d-glutamic acid-adding enzyme: Activity optimisation with conformationally rigid analogues of d-glutamic acid., Sosic I, Barreteau H, Simcic M, Sink R, Cesar J, Zega A, Grdadolnik SG, Contreras-Martel C, Dessen A, Amoroso A, Joris B, Blanot D, Gobec S, Eur J Med Chem. 2011 Apr 9. PMID:21524830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (2xpc.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 2XPC
  • CSU: Contacts of Structural Units for 2XPC
  • Structure Factors (633 Kb)
  • Retrieve 2XPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XPC from S2C, [Save to disk]
  • Re-refined 2xpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XPC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XPC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xpc_A] [2xpc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XPC
  • Community annotation for 2XPC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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