3AN3	Transcription	date	Aug 30, 2010
title	Human Ppar Gamma Ligand Binding Domain In Complex With A Gam Selective Agonist Mo3s
authors	T.Oyama, M.Ohashi, T.Waku, H.Miyachi, K.Morikawa
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.227 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.192 61.061 118.618 90.00 102.82 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	M7S BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPARgamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship., Ohashi M, Oyama T, Nakagome I, Satoh M, Nishio Y, Nobusada H, Hirono S, Morikawa K, Hashimoto Y, Miyachi H, J Med Chem. 2010 Dec 3. PMID:21128600

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3an3.pdb1.gz) 86 Kb Biological Unit Coordinates (3an3.pdb2.gz) 86 Kb LPC: Ligand-Protein Contacts for 3AN3 CSU: Contacts of Structural Units for 3AN3 Structure Factors (376 Kb) Retrieve 3AN3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3AN3 from S2C, [Save to disk] Re-refined 3an3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3AN3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3AN3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3AN3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3an3_B] [3an3_A] [3an3] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3AN3: [HOLI ] by SMART

Other resources with information on 3AN3

Community annotation for 3AN3 at PDBWiki (http://pdbwiki.org)

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