3BXW Hydrolase date Jan 15, 2008
title Crystal Structure Of Stabilin-1 Interacting Chitinase-Like P Si-Clp
authors G.Meng, T.J.Green
compound source
Molecule: Chitinase Domain-Containing Protein 1
Chain: B, A
Synonym: Stabilin-1-Interacting Chitinase-Like Protein, Si- Chid1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chid1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 32 2 1
R_factor 0.222 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.110 100.110 249.970 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of human stabilin-1 interacting chitinase-like protein (SI-CLP) reveals a saccharide-binding cleft with lower sugar-binding selectivity., Meng G, Zhao Y, Bai X, Liu Y, Green TJ, Luo M, Zheng X, J Biol Chem. 2010 Dec 17;285(51):39898-904. Epub 2010 Aug 19. PMID:20724479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (3bxw.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 3BXW
  • CSU: Contacts of Structural Units for 3BXW
  • Likely Quarternary Molecular Structure file(s) for 3BXW
  • Structure Factors (742 Kb)
  • Retrieve 3BXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BXW from S2C, [Save to disk]
  • Re-refined 3bxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BXW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bxw_B] [3bxw] [3bxw_A]
  • SWISS-PROT database: [Q9BWS9]
  • Domain organization of [CHID1_HUMAN] by SWISSPFAM
  • Domain found in 3BXW: [Glyco_18 ] by SMART
  • Other resources with information on 3BXW
  • Community annotation for 3BXW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science