3F53	Cell Adhesion	date	Nov 03, 2008
title	Crystal Structure Of Toxoplasma Gondii Micronemal Protein 1 2f-3'Sialacnac
authors	J.A.Garnett
compound		source
Molecule: Micronemal Protein 1 Chain: A Fragment: N-Terminal Domain: Residues 17-262 Engineered: Yes		Organism_scientific: Toxoplasma Gondii Organism_taxid: 383379 Strain: Rh Gene: Mic1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origami Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
symmetry	Space Group: P 43 21 2	R_factor 0.168 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.361 66.361 172.371 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	2FG, ACT, CL, GOL, MSE, SIA	enzyme
Primary reference	Detailed insights from microarray and crystallographic studies into carbohydrate recognition by microneme protein 1 (MIC1) of Toxoplasma gondii., Garnett JA, Liu Y, Leon E, Allman S, Friedrich N, Saouros S, Curry S, Soldati-Favre D, Davis B, Feizi T, Matthews S, Protein Sci. 2009 Jul 10. PMID:19593815

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (3f53.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 3F53 CSU: Contacts of Structural Units for 3F53 Likely Quarternary Molecular Structure file(s) for 3F53 Structure Factors (356 Kb) Retrieve 3F53 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F53 from S2C, [Save to disk] Re-refined 3f53 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F53 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F53

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F53, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f53_A] [3f53] SWISS-PROT database: [O00834] Domain organization of [MIC1_TOXGO] by SWISSPFAM

Other resources with information on 3F53

Community annotation for 3F53 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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