3FKQ Structural Genomics, Unknown Function date Dec 17, 2008
title Crystal Structure Of Ntrc-Like Two-Domain Protein (Rer070207 From Eubacterium Rectale At 2.10 A Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Ntrc-Like Two-Domain Protein
Chain: A
Engineered: Yes
 Organism_scientific: Eubacterium Rectale
Organism_taxid: 39491
Gene: Rer070207001320
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.506 79.495 55.022 90.00 96.16 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 2PE, ATP, CL, GOL, MG, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization., Xu Q, Christen B, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Figurski DH, Shapiro L, Wilson IA, Mol Microbiol. 2012 Feb;83(4):712-27. doi: 10.1111/j.1365-2958.2011.07954.x. Epub, 2012 Jan 18. PMID:22211578
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3fkq.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3FKQ
  • CSU: Contacts of Structural Units for 3FKQ
  • Likely Quarternary Molecular Structure file(s) for 3FKQ
  • Structure Factors (3885 Kb)
  • Retrieve 3FKQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FKQ from S2C, [Save to disk]
  • Re-refined 3fkq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FKQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FKQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FKQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fkq] [3fkq_A]
  • SWISS-PROT database: [D0VX10]
  • Domain organization of [D0VX10_9FIRM] by SWISSPFAM
    • Other resources with information on 3FKQ
  • Community annotation for 3FKQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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