3FMR	Hydrolase	date	Dec 22, 2008
title	Crystal Structure Of An Encephalitozoon Cuniculi Methionine Aminopeptidase Type 2 With Angiogenesis Inhibitor Tnp470 Bo
authors	J.J.Alvarado, M.Russell, A.Zhang, J.Adams, R.Toro, S.K.Burley, L.M S.C.Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc)
compound		source
Molecule: Methionine Aminopeptidase 2 Chain: A, B Synonym: Metap 2, Map-2, Peptidase M 2 Ec: 3.4.11.18 Engineered: Yes		Organism_scientific: Encephalitozoon Cuniculi Organism_taxid: 6035 Strain: Gb-M1 Gene: Ecu10_0750, Map2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pbac2
symmetry	Space Group: P 1 21 1	R_factor 0.178 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.977 94.067 66.407 90.00 99.33 90.00
method	X-Ray Diffraction	resolution	2.89 Å
ligand	FE, SO4, TN4	enzyme	Hydrolase E.C.3.4.11.18 BRENDA
note	3FMR supersedes 3D0D
Gene	ECU10
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of a microsporidian methionine aminopeptidase type 2 complexed with fumagillin and TNP-470., Alvarado JJ, Nemkal A, Sauder JM, Russell M, Akiyoshi DE, Shi W, Almo SC, Weiss LM, Mol Biochem Parasitol. 2009 Dec;168(2):158-67. Epub 2009 Aug 4. PMID:19660503

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (3fmr.pdb1.gz) 57 Kb Biological Unit Coordinates (3fmr.pdb2.gz) 56 Kb LPC: Ligand-Protein Contacts for 3FMR CSU: Contacts of Structural Units for 3FMR Likely Quarternary Molecular Structure file(s) for 3FMR Structure Factors (130 Kb) Retrieve 3FMR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FMR from S2C, [Save to disk] Re-refined 3fmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FMR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FMR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FMR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fmr] [3fmr_A] [3fmr_B] SWISS-PROT database: [Q8SR45] Domain organization of [AMPM2_ENCCU] by SWISSPFAM

Other resources with information on 3FMR

Community annotation for 3FMR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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