3H9P Structural Genomics, Unknown Function date Apr 30, 2009
title Crystal Structure Of Putative Triphosphoribosyl-Dephospho-Co From Archaeoglobus Fulgidus
authors C.Chang, R.Wu, M.Gu, A.Joachimiak, Midwest Center For Structural (Mcsg)
compound source
Molecule: Putative Triphosphoribosyl-Dephospho-Coa Synthase
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus Dsm 4304
Organism_taxid: 224325
Gene: Af_1835
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.806 77.725 66.654 90.00 97.99 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, GOL, MSE, PG4 enzyme
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3h9p.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (3h9p.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3H9P
  • CSU: Contacts of Structural Units for 3H9P
  • Likely Quarternary Molecular Structure file(s) for 3H9P
  • Structure Factors (626 Kb)
  • Retrieve 3H9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H9P from S2C, [Save to disk]
  • Re-refined 3h9p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H9P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H9P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h9p_B] [3h9p] [3h9p_C] [3h9p_A]
  • SWISS-PROT database: [O28441]
  • Domain organization of [O28441_ARCFU] by SWISSPFAM
    • Other resources with information on 3H9P
  • Community annotation for 3H9P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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