OCA Atlas for 3HDZ

3HDZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, PD6, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Identification, synthesis and SAR of amino substituted pyrido[3,2b]pyrazinones as potent and selective PDE5 inhibitors., Owen DR, Walker JK, Jon Jacobsen E, Freskos JN, Hughes RO, Brown DL, Bell AS, Brown DG, Phillips C, Mischke BV, Molyneaux JM, Fobian YM, Heasley SE, Moon JB, Stallings WC, Joseph Rogier D, Fox DN, Palmer MJ, Ringer T, Rodriquez-Lens M, Cubbage JW, Blevis-Bal RM, Benson AG, Acker BA, Maddux TM, Tollefson MB, Bond BR, Macinnes A, Yu Y, Bioorg Med Chem Lett. 2009 Jun 6. PMID:19540112

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]

Biological Unit Coordinates (3hdz.pdb1.gz) 60 Kb

LPC: Ligand-Protein Contacts for 3HDZ

CSU: Contacts of Structural Units for 3HDZ

Likely Quarternary Molecular Structure file(s) for 3HDZ

Structure Factors (735 Kb)

Retrieve 3HDZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3HDZ from S2C, [Save to disk]

Re-refined 3hdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HDZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hdz] [3hdz_A]

SWISS-PROT database: [Q07343] [O76074]

Domain found in 3HDZ: [HDc ] by SMART

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