3HYZ Chaperone date Jun 23, 2009
title Crystal Structure Of Hsp90 With Fragment 42-C03
authors J.Barker, O.Mather, R.K.Y.Cheng, S.Palan, B.Felicetti, M.Whittake
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A, B
Fragment: N-Terminal Domain
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 2
R_factor 0.236 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.490 89.250 98.956 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 42C enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3hyz.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3hyz.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3HYZ
  • CSU: Contacts of Structural Units for 3HYZ
  • Structure Factors (403 Kb)
  • Retrieve 3HYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HYZ from S2C, [Save to disk]
  • Re-refined 3hyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HYZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HYZ, from MSDmotif at EBI
  • Fold representative 3hyz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hyz] [3hyz_B] [3hyz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3HYZ: [HATPase_c ] by SMART
  • Alignments of the sequence of 3HYZ with the sequences similar proteins can be viewed for 3HYZ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3HYZ
  • Community annotation for 3HYZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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