4V6D Ribosome date 9-0 20, 1998
authors W.Zhang, J.A.Dunkle, J.H.D.Cate
compound source
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
210.720 435.070 628.730 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V6D supersedes 3I1Q, 3I1R, 3I1S, 3I1T
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT
  • ornithine decarboxylase inhi...


  • AU, CU


    B0, D0


    B1, D1


    B3, D3


    B4, D4


    BC, DC


    BE, DE
  • translation repressor activi...


  • BF, DF


    BL, DL


    BN, DN


    BO, DO


    BQ, DQ
  • translation repressor activi...


  • BS, DS


    BT, DT


    BW, DW


    BX, DX


    BY, DY


    CD, AD


    CE, AE


    CF, AF


    CG, AG


    CJ, AJ


    CK, AK


    CP, AP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • CQ, AQ


    CR, AR


    D2, B2


    DD, BD


    DG, BG


    DH, BH


    DI, BI


    DJ, BJ


    DK, BK


    DM, BM


    DP, BP


    DR, BR


    DU, BU


    DV, BV


    DZ, BZ


    Primary referenceStructures of the ribosome in intermediate states of ratcheting., Zhang W, Dunkle JA, Cate JH, Science. 2009 Aug 21;325(5943):1014-7. PMID:19696352
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2211 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6D
  • Structure Factors (3876 Kb)
  • Retrieve 4V6D in mmCIF format [Save to disk]
  • View 4V6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v6d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6d_DW] [4v6d_DG] [4v6d_AO] [4v6d_BV] [4v6d_CE] [4v6d_CF] [4v6d_CA] [4v6d_BB] [4v6d_BR] [4v6d_DR] [4v6d_B1] [4v6d_CG] [4v6d_AJ] [4v6d_DM] [4v6d_DS] [4v6d_BK] [4v6d_DF] [4v6d_CD] [4v6d_BJ] [4v6d_BT] [4v6d_D2] [4v6d] [4v6d_BS] [4v6d_DT] [4v6d_D1] [4v6d_CP] [4v6d_B4] [4v6d_DK] [4v6d_AA] [4v6d_DP] [4v6d_AC] [4v6d_DA] [4v6d_AW] [4v6d_DO] [4v6d_CC] [4v6d_DX] [4v6d_DU] [4v6d_DC] [4v6d_CJ] [4v6d_DI] [4v6d_B0] [4v6d_AS] [4v6d_CR] [4v6d_CS] [4v6d_BQ] [4v6d_CW] [4v6d_CT] [4v6d_BE] [4v6d_DQ] [4v6d_DZ] [4v6d_DY] [4v6d_AV] [4v6d_DL] [4v6d_CI] [4v6d_AQ] [4v6d_AN] [4v6d_CV] [4v6d_CM] [4v6d_BO] [4v6d_AI] [4v6d_BW] [4v6d_AL] [4v6d_DJ] [4v6d_CL] [4v6d_BH] [4v6d_AT] [4v6d_BL] [4v6d_B2] [4v6d_AP] [4v6d_BM] [4v6d_BF] [4v6d_DV] [4v6d_BU] [4v6d_CB] [4v6d_AR] [4v6d_BD] [4v6d_AD] [4v6d_BX] [4v6d_AK] [4v6d_AE] [4v6d_DB] [4v6d_CQ] [4v6d_BZ] [4v6d_BP] [4v6d_AG] [4v6d_AU] [4v6d_D0] [4v6d_BI] [4v6d_BA] [4v6d_DN] [4v6d_CH] [4v6d_BC] [4v6d_BN] [4v6d_BY] [4v6d_DE] [4v6d_AF] [4v6d_CN] [4v6d_CU] [4v6d_AH] [4v6d_D3] [4v6d_DH] [4v6d_CK] [4v6d_CO] [4v6d_AM] [4v6d_DD] [4v6d_D4] [4v6d_AB] [4v6d_B3] [4v6d_BG]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V6D
  • Community annotation for 4V6D at PDBWiki (http://pdbwiki.org)

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