3IJ2	Hormone Protein Binding	date	Aug 03, 2009
title	Ligand-Receptor Structure
authors	D.Feng, K.C.Garcia
compound		source
Molecule: Beta-Nerve Growth Factor Chain: A, B Fragment: Unp Residues 129-241 Synonym: Beta-Ngf Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ngf, Ngfb Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
Molecule: Nerve Growth Factor Receptor (Tnfr Superfamily, M Chain: X, Y Fragment: Unp Residues 30-190 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Ngfr, Rp23-67e18.6-001 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
symmetry	Space Group: P 32 2 1	R_factor 0.256 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 145.406 145.406 114.252 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.75 Å
Gene Ontology	Chain Function Process Component A, B metalloendopeptidase inhibit... transmembrane receptor prote...
Primary reference	Molecular and Structural Insight into proNGF Engagement of p75NTR and Sortilin., Feng D, Kim T, Ozkan E, Light M, Torkin R, Teng KK, Hempstead BL, Garcia KC, J Mol Biol. 2009 Dec 28. PMID:20036257

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (3ij2.pdb1.gz) 75 Kb CSU: Contacts of Structural Units for 3IJ2 Structure Factors (299 Kb) Retrieve 3IJ2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IJ2 from S2C, [Save to disk] Re-refined 3ij2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IJ2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IJ2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IJ2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ij2] [3ij2_X] [3ij2_A] [3ij2_B] [3ij2_Y] SWISS-PROT database: [P01139] [P07174] Domain organization of [NGF_MOUSE] [TNR16_RAT] by SWISSPFAM Domains found in 3IJ2: [NGF] [TNFR ] by SMART

Other resources with information on 3IJ2

Community annotation for 3IJ2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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