4V6X Ribosome date 3-0 20, 1998
authors A.M.Anger, J.P.Armache, O.Berninghausen, M.Habeck, M.Subkle D.N.Wilson, R.Beckmann
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V6X supersedes 3J3A, 3J3B, 3J3D, 3J3F
Gene
Ontology
ChainFunctionProcessComponent
AA
  • virus receptor activity

  • cytosolic small ribosomal su...
  • AB

  • cytosolic small ribosomal su...
  • AC

  • cytosolic small ribosomal su...
  • AD

  • cytosolic small ribosomal su...
  • AE

  • ribosome
  • cytosolic small ribosomal su...
  • AF

  • cytosolic small ribosomal su...
  • AG

  • cytosolic small ribosomal su...
  • AH

  • cytosolic small ribosomal su...
  • AI

  • cytosolic small ribosomal su...
  • AJ

  • cytosolic small ribosomal su...
  • AK

  • cytosolic small ribosomal su...
  • AL

  • cytosolic small ribosomal su...
  • AM

  • cytosolic small ribosomal su...
  • AN

  • cytosolic small ribosomal su...
  • AO
  • translation regulator activi...

  • cytosolic small ribosomal su...
  • AP

  • cytosolic small ribosomal su...
  • AQ

  • cytosolic small ribosomal su...
  • AR

  • cytosolic small ribosomal su...
  • AS

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • AT

  • cytosolic small ribosomal su...
  • AU

  • cytosolic small ribosomal su...
  • AV

  • cytosolic small ribosomal su...
  • AW

  • cytosolic small ribosomal su...
  • AX

  • cytosolic small ribosomal su...
  • AY

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • AZ

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Aa

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Ab

  • cytosolic small ribosomal su...
  • Ac

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Ad

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Ae

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Ag
  • protein tyrosine kinase inhi...


  • Ah


    Az


    CA


    CB


    CC


    CD


    CE


    CF


    CG


    CH


    CI


    CJ


    CK


    CL


    CM


    CN


    CO


    CP


    CQ


    CR


    CS


    CT


    CU


    CV


    CW


    CX


    CY


    CZ


    Ca


    Cb


    Cc


    Cd


    Cf


    Cg


    Ch


    Ci


    Cj


    Ck


    Cn, Cl, Ce


    Co

  • cytosolic large ribosomal su...
  • Cp


    Cq


    Cr


    Ct, Cs
  • protein kinase activator act...


  • Cu, Cv


    Cz


    Primary referenceStructures of the human and Drosophila 80S ribosome., Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R, Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. PMID:23636399
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1691 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6X
  • Retrieve 4V6X in mmCIF format [Save to disk]
  • View 4V6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v6x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6x_CM] [4v6x_Ca] [4v6x_AY] [4v6x_Cu] [4v6x_Ck] [4v6x_Cv] [4v6x_AA] [4v6x_Ae] [4v6x_Cp] [4v6x_AQ] [4v6x_Cb] [4v6x_Ct] [4v6x_Co] [4v6x_Cj] [4v6x_CP] [4v6x_CU] [4v6x_AK] [4v6x_AV] [4v6x_Cf] [4v6x_AR] [4v6x_Cd] [4v6x_A7] [4v6x_A8] [4v6x_B2] [4v6x_AO] [4v6x_CZ] [4v6x_Cz] [4v6x_AX] [4v6x_CH] [4v6x_CJ] [4v6x_Aa] [4v6x_AC] [4v6x_AH] [4v6x_BC] [4v6x_CX] [4v6x_CI] [4v6x_Az] [4v6x_CK] [4v6x_CY] [4v6x_AW] [4v6x_Ci] [4v6x_AG] [4v6x_CN] [4v6x_CF] [4v6x_CC] [4v6x_Cq] [4v6x_CL] [4v6x_AJ] [4v6x_Cs] [4v6x_Cm] [4v6x_CG] [4v6x_CA] [4v6x_CR] [4v6x_Cl] [4v6x_AP] [4v6x] [4v6x_CT] [4v6x_A5] [4v6x_Cg] [4v6x_CB] [4v6x_AF] [4v6x_Ce] [4v6x_Cn] [4v6x_AT] [4v6x_AN] [4v6x_AU] [4v6x_AB] [4v6x_CD] [4v6x_CO] [4v6x_Cc] [4v6x_AE] [4v6x_CE] [4v6x_AZ] [4v6x_Ad] [4v6x_Ag] [4v6x_Ab] [4v6x_Af] [4v6x_AI] [4v6x_AD] [4v6x_CS] [4v6x_CQ] [4v6x_Ac] [4v6x_AS] [4v6x_CV] [4v6x_AL] [4v6x_Ch] [4v6x_AM] [4v6x_Cr] [4v6x_CW] [4v6x_Ah]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V6X
  • Community annotation for 4V6X at PDBWiki (http://pdbwiki.org)

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