3J6P	Motor Protein Structural Protein	date	Mar 20, 2014
title	Pseudo-Atomic Model Of Dynein Microtubule Binding Domain-Tub Complex Based On A Cryoem Map
authors	S.Uchimura, T.Fujii, H.Takazaki, R.Ayukawa, Y.Nishikawa, I.Minour Y.Hachikubo, G.Kurisu, K.Sutoh, T.Kon, K.Namba, E.Muto
compound		source
Molecule: Dynein Heavy Chain, Cytoplasmic Chain: D Synonym: Dynein Heavy Chain, Cytosolic, Dyhc Engineered: Yes		Organism_scientific: Dictyostelium Discoideum Organism_common: Slime Mold Organism_taxid: 44689 Gene: Ddb_g0276355, Dhca Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
Molecule: Tubulin Alpha-1a Chain Chain: A Synonym: Alpha-Tubulin 1, Tubulin Alpha-1 Chain		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823
Molecule: Tubulin Beta Chain Chain: B Synonym: Beta-Tubulin		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	8.20 Å
ligand	GDP, GTP, MG, TA1	enzyme
Gene	DDB
Gene Ontology	Chain Function Process Component A B
Primary reference	A flipped ion pair at the dynein-microtubule interface is critical for dynein motility and ATPase activation., Uchimura S, Fujii T, Takazaki H, Ayukawa R, Nishikawa Y, Minoura I, Hachikubo Y, Kurisu G, Sutoh K, Kon T, Namba K, Muto E, J Cell Biol. 2015 Jan 19;208(2):211-22. doi: 10.1083/jcb.201407039. Epub 2015 Jan, 12. PMID:25583999

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (3j6p.pdb1.gz) 151 Kb LPC: Ligand-Protein Contacts for 3J6P CSU: Contacts of Structural Units for 3J6P Retrieve 3J6P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3J6P from S2C, [Save to disk]

View 3J6P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3J6P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3J6P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3j6p_A] [3j6p] [3j6p_B] [3j6p_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3J6P: [Tubulin] [Tubulin_C ] by SMART

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