3J9M Ribosome date 5-0 20, 2000
authors A.Amunts, A.Brown, J.Toots, S.H.Scheres, V.Ramakrishnan
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
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  • mitochondrial small ribosoma...
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    Primary referenceRibosome. The structure of the human mitochondrial ribosome., Amunts A, Brown A, Toots J, Scheres SH, Ramakrishnan V, Science. 2015 Apr 3;348(6230):95-8. doi: 10.1126/science.aaa1193. Epub 2015 Apr, 2. PMID:25838379
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1926 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 3J9M
  • Retrieve 3J9M in mmCIF format [Save to disk]
  • View 3J9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J9M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 3j9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j9m_6] [3j9m_AG] [3j9m_O] [3j9m_W] [3j9m_9] [3j9m_X] [3j9m_F] [3j9m_Z] [3j9m] [3j9m_f] [3j9m_AE] [3j9m_AN] [3j9m_B] [3j9m_R] [3j9m_r] [3j9m_V] [3j9m_I] [3j9m_K] [3j9m_8] [3j9m_J] [3j9m_5] [3j9m_N] [3j9m_AK] [3j9m_AR] [3j9m_m] [3j9m_L] [3j9m_AI] [3j9m_AZ] [3j9m_AC] [3j9m_a] [3j9m_AW] [3j9m_A1] [3j9m_AL] [3j9m_s] [3j9m_h] [3j9m_AA] [3j9m_AS] [3j9m_A2] [3j9m_AD] [3j9m_Q] [3j9m_AX] [3j9m_T] [3j9m_q] [3j9m_S] [3j9m_3] [3j9m_AU] [3j9m_1] [3j9m_AY] [3j9m_P] [3j9m_A3] [3j9m_e] [3j9m_AO] [3j9m_AP] [3j9m_c] [3j9m_j] [3j9m_k] [3j9m_Y] [3j9m_AF] [3j9m_0] [3j9m_AQ] [3j9m_i] [3j9m_U] [3j9m_u] [3j9m_E] [3j9m_l] [3j9m_D] [3j9m_o] [3j9m_A] [3j9m_AJ] [3j9m_A0] [3j9m_7] [3j9m_AB] [3j9m_d] [3j9m_4] [3j9m_AH] [3j9m_M] [3j9m_AV] [3j9m_g] [3j9m_b] [3j9m_H] [3j9m_t] [3j9m_2] [3j9m_AM] [3j9m_p] [3j9m_AT] [3j9m_A4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3J9M: [DUF1713] [KOW] [L51_S25_CI-B8] [RIBOc] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [S1] [Tim44 ] by SMART
  • Other resources with information on 3J9M
  • Community annotation for 3J9M at PDBWiki (http://pdbwiki.org)

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