3KES	Protein Transport, Rna Binding Protein	date	Oct 26, 2009
title	Crystal Structure Of The Autoproteolytic Domain From The Nuc Complex Component Nup145 From Saccharomyces Cerevisiae In T Hexagonal, P61 Space Group
authors	P.Sampathkumar, S.A.Ozyurt, J.Do, K.Bain, M.Dickey, T.Gheyi, A.Sal S.J.Kim, J.Phillips, U.Pieper, J.Fernandez-Martinez, J.D.Franke S.Atwell, D.A.Thompson, J.S.Emtage, S.Wasserman, M.Rout, J.M.Sau S.K.Burley, New York Sgx Research Center For Structural Geno (Nysgxrc)
compound		source
Molecule: Nucleoporin Nup145 Chain: A, B Fragment: Residues 442 To 605 Synonym: Nuclear Pore Protein Nup145, Nucleoporin Nup145n, Nucleoporin Nup145c, C-Nup145; Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Nup145, Rat10, Ygl092w Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc); Modified Pet26b
symmetry	Space Group: P 61	R_factor 0.190 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.052 135.052 56.154 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	EDO, MSE	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145., Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sauder JM, Burley SK, Proteins. 2010 Jun;78(8):1992-8. PMID:20310066

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (3kes.pdb1.gz) 27 Kb Biological Unit Coordinates (3kes.pdb2.gz) 29 Kb LPC: Ligand-Protein Contacts for 3KES CSU: Contacts of Structural Units for 3KES Structure Factors (1530 Kb) Retrieve 3KES in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KES from S2C, [Save to disk] Re-refined 3kes structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KES in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KES

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KES, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kes_B] [3kes] [3kes_A] SWISS-PROT database: [P49687] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NU145_YEAST] by SWISSPFAM

Other resources with information on 3KES

Community annotation for 3KES at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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