3R45 Nuclear Protein date Mar 17, 2011
title Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Hjurp
authors H.Hu, Y.Liu, M.Wang, J.Fang, H.Huang, N.Yang, Y.Li, J.Wang, X.Yao, Y. R.M.Xu
compound source
Molecule: Histone H3-Like Centromeric Protein A
Chain: A
Synonym: Centromere Autoantigen A, Centromere Protein A, Ce
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cenpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet

Molecule: Histone H4
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet

Molecule: Holliday Junction Recognition Protein
Chain: C
Fragment: Residues 1-80
Synonym: Hjurp, 14-3-3-Associated Akt Substrate, Fetal Live Expressing Gene 1 Protein, Up-Regulated In Lung Cancer 9;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hjurp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Smt3
symmetry Space Group: P 3 1 2
R_factor 0.185 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.941 83.941 86.773 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand GOL, SO4 enzyme
note 3R45 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • establishment of mitotic spi...

  • B


    C


    Primary referenceStructure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP., Hu H, Liu Y, Wang M, Fang J, Huang H, Yang N, Li Y, Wang J, Yao X, Shi Y, Li G, Xu RM, Genes Dev. 2011 May 1;25(9):901-6. Epub 2011 Apr 8. PMID:21478274
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3r45.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3R45
  • CSU: Contacts of Structural Units for 3R45
  • Structure Factors (239 Kb)
  • Retrieve 3R45 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3R45 from S2C, [Save to disk]
  • Re-refined 3r45 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3R45 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3R45
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3R45, from MSDmotif at EBI
  • Fold representative 3r45 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3r45_A] [3r45_C] [3r45] [3r45_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3R45: [H3] [H4 ] by SMART
  • Other resources with information on 3R45
  • Community annotation for 3R45 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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