3T36 Lyase date Jul 24, 2011
title Crystal Structure Of Lytic Transglycosylase Mlte From Escher
authors G.Fibriansah, F.I.Gliubich, A.M.W.H.Thunnissen
compound source
Molecule: Endo-Type Membrane-Bound Lytic Murein Transglycos
Chain: A, B, C, D, E
Fragment: Unp Residues 17-203
Synonym: Mlte, Peptidoglycan Lytic Endotransglycosylase
Ec: 4.2.2.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Emta, Mlte, Sltz, Ycgp, B1193, Jw5821
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmt429-Emta
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.764 94.925 160.494 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand SO4 enzyme Lyase E.C.4.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceOn the mechanism of peptidoglycan binding and cleavage by the endo-specific lytic transglycosylase MltE from Escherichia coli., Fibriansah G, Gliubich FI, Thunnissen AM, Biochemistry. 2012 Oct 17. PMID:23075328
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3t36.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (3t36.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (3t36.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (3t36.pdb4.gz) 30 Kb
  • Biological Unit Coordinates (3t36.pdb5.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3T36
  • CSU: Contacts of Structural Units for 3T36
  • Structure Factors (879 Kb)
  • Retrieve 3T36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T36 from S2C, [Save to disk]
  • Re-refined 3t36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T36
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T36, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t36_A] [3t36_B] [3t36_D] [3t36_E] [3t36_C] [3t36]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T36
  • Community annotation for 3T36 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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