3TXK Hydrolase date Sep 23, 2011
title Hewl Co-Crystallization With Cisplatin In Dmso Media With Pa The Cryoprotectant At Ph 6.5
authors S.W.M.Tanley, A.M.M.Schreurs, J.R.Helliwell, L.M.J.Kroon-Batenb
compound source
Molecule: Lysozyme C
Chain: A
Fragment: Unp Residues 19-147
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 43 21 2
R_factor 0.211 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.460 79.460 36.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CL, CPT, DMS, NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExperience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals., Tanley SW, Schreurs AM, Helliwell JR, Kroon-Batenburg LM, J Appl Crystallogr. 2013 Feb 1;46(Pt 1):108-119. Epub 2012 Dec 8. PMID:23396873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3txk.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3TXK
  • CSU: Contacts of Structural Units for 3TXK
  • Structure Factors (122 Kb)
  • Retrieve 3TXK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TXK from S2C, [Save to disk]
  • Re-refined 3txk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TXK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TXK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TXK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3txk] [3txk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TXK: [LYZ1 ] by SMART
  • Other resources with information on 3TXK
  • Community annotation for 3TXK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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