3VJI	Transcription	date	Oct 20, 2011
title	Human Ppar Gamma Ligand Binding Domain In Complex With Jkpl5
authors	D.Tomioka, N.Kuwabara, H.Hashimoto, M.Sato, T.Shimizu
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Unp Residues 223-504 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.212 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.150 60.610 118.771 90.00 103.79 90.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand	J53	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype., Kuwabara N, Oyama T, Tomioka D, Ohashi M, Yanagisawa J, Shimizu T, Miyachi H, J Med Chem. 2012 Jan 26;55(2):893-902. Epub 2012 Jan 10. PMID:22185225

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk] Biological Unit Coordinates (3vji.pdb1.gz) 168 Kb LPC: Ligand-Protein Contacts for 3VJI CSU: Contacts of Structural Units for 3VJI Structure Factors (252 Kb) Retrieve 3VJI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VJI from S2C, [Save to disk] Re-refined 3vji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VJI in 3D

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Visual 3D analysis of 3VJI

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VJI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vji] [3vji_A] [3vji_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VJI: [HOLI ] by SMART

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