3ZBI	Cell Adhesion	date	Nov 10, 2012
title	Fitting Result In The O-Layer Of The Subnanometer Structure Bacterial Pkm101 Type Iv Secretion System Core Complex Dige Elastase
authors	A.Rivera-Calzada, R.Fronzes, C.G.Savva, V.Chandran, P.W.Lian, T.L E.Pardon, J.Steyaert, H.Remaut, G.Waksman, E.V.Orlova
compound		source
Molecule: Traf Protein Chain: A, D, G, J, M, P, S, V, Y, b, e, h, k, n Fragment: C-Terminal Domain, Residues 171-386 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 511693 Strain: Bl21 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Pkm101 Expression_system_plasmid: Pask-Iba3c
Molecule: Trao Protein Chain: B, E, H, K, N, Q, T, W, Z, c, f, I, l, o Fragment: C-Terminal Domain, Residues 161-290 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 511693 Strain: Bl21 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Pkm101 Expression_system_plasmid: Pask-Iba3c
Molecule: Tran Protein Chain: C, F, I, L, O, R, U, X, a, d, g, j, m, p Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 511693 Strain: Bl21 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Pkm101 Expression_system_plasmid: Pask-Iba3c
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	8.50 Å
Primary reference	Structure of a bacterial type IV secretion core complex at subnanometre resolution., Rivera-Calzada A, Fronzes R, Savva CG, Chandran V, Lian PW, Laeremans T, Pardon E, Steyaert J, Remaut H, Waksman G, Orlova EV, EMBO J. 2013 Mar 19. doi: 10.1038/emboj.2013.58. PMID:23511972

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (703 Kb) [Save to disk] Biological Unit Coordinates (3zbi.pdb1.gz) 706 Kb CSU: Contacts of Structural Units for 3ZBI Retrieve 3ZBI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZBI from S2C, [Save to disk]

View 3ZBI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZBI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZBI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zbi_n] [3zbi_Z] [3zbi_H] [3zbi_W] [3zbi_M] [3zbi_T] [3zbi_A] [3zbi_D] [3zbi_X] [3zbi_f] [3zbi] [3zbi_c] [3zbi_P] [3zbi_p] [3zbi_J] [3zbi_b] [3zbi_m] [3zbi_G] [3zbi_k] [3zbi_U] [3zbi_N] [3zbi_F] [3zbi_d] [3zbi_I] [3zbi_L] [3zbi_l] [3zbi_V] [3zbi_C] [3zbi_E] [3zbi_j] [3zbi_R] [3zbi_h] [3zbi_i] [3zbi_g] [3zbi_Q] [3zbi_B] [3zbi_Y] [3zbi_K] [3zbi_a] [3zbi_o] [3zbi_e] [3zbi_S] [3zbi_O] SWISS-PROT database: Domain organization of by SWISSPFAM

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