3ZNZ	Hydrolase	date	Feb 18, 2013
title	Crystal Structure Of Otulin Otu Domain (C129a) In Complex With Met1-Di Ubiquitin
authors	K.Keusekotten, P.R.Elliott, L.Glockner, Y.Kulathu, T.Wauer, D.Kra K.Hofmann, D.Komander
compound		source
Molecule: Protein Fam105b Chain: A Fragment: Otu Domain, Residues 80-352 Ec: 3.4.19.12 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Rosetta Placi Expression_system_vector_type: Plasmid Expression_system_vector: Popinf
Molecule: Polyubiquitin-C Chain: B Synonym: Met1-Di Ubiquitin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Rosetta Placi Expression_system_vector_type: Plasmid Expression_system_vector: Pet17b
symmetry	Space Group: H 3 2	R_factor 0.1839 R_Free 0.2220
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.020 100.020 280.260 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	SO4	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	OTULIN Antagonizes LUBAC Signaling by Specifically Hydrolyzing Met1-Linked Polyubiquitin., Keusekotten K, Elliott PR, Glockner L, Fiil BK, Damgaard RB, Kulathu Y, Wauer T, Hospenthal MK, Gyrd-Hansen M, Krappmann D, Hofmann K, Komander D, Cell. 2013 Jun 6;153(6):1312-26. doi: 10.1016/j.cell.2013.05.014. PMID:23746843

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (3znz.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 3ZNZ CSU: Contacts of Structural Units for 3ZNZ Structure Factors (1697 Kb) Retrieve 3ZNZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZNZ from S2C, [Save to disk] Re-refined 3znz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZNZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZNZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZNZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3znz] [3znz_B] [3znz_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ZNZ: [UBQ ] by SMART

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