3ANV Crystal structure of D-serine dehydratase from chicken kidney (2,3-DAP complex) date
authors Tanaka, H., Senda, M., Venugopalan, N., Yamamoto, A., Senda, T., Ishida, T., Horiike, K.
compound source
symmetry
R_factor
R_Free 0.23379
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.09
ligand 2RA, CL, PLP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a zinc-dependent D-serine dehydratase from chicken kidney., Tanaka H, Senda M, Venugopalan N, Yamamoto A, Senda T, Ishida T, Horiike K, J Biol Chem. 2011 Aug 5;286(31):27548-58. Epub 2011 Jun 15. PMID:21676877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3anv.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 3ANV
  • CSU: Contacts of Structural Units for 3ANV
  • Structure Factors (366 Kb)
  • Retrieve 3ANV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ANV from S2C, [Save to disk]
  • Re-refined 3anv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ANV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ANV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ANV, from MSDmotif at EBI
  • Fold representative 3anv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3anv] [3anv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ANV: [D-ser_dehydrat ] by SMART
  • Other resources with information on 3ANV
  • Community annotation for 3ANV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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