3D10 Crystal Structure of S100B in the Calcium and Zinc Loaded State at pH 10.0 date
authors Ostendorp, T., Diez, J., Heizmann, C.W., Fritz, G.
compound source
symmetry
R_factor
R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand CA, PGE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structures of human S100B in the zinc- and calcium-loaded state at three pH values reveal zinc ligand swapping., Ostendorp T, Diez J, Heizmann CW, Fritz G, Biochim Biophys Acta. 2010 Oct 13. PMID:20950652
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3d10.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3D10
  • CSU: Contacts of Structural Units for 3D10
  • Likely Quarternary Molecular Structure file(s) for 3D10
  • Structure Factors (706 Kb)
  • Retrieve 3D10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D10 from S2C, [Save to disk]
  • Re-refined 3d10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D10
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D10, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d10_A] [3d10_B] [3d10]
  • SWISS-PROT database: [P04271]
  • Belongs to the s100 calcium-binding protein (s100) family according to TCDB.
  • Domain organization of [S100B_HUMAN] by SWISSPFAM
  • Domain found in 3D10: [S_100 ] by SMART
  • Other resources with information on 3D10
  • Community annotation for 3D10 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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