3ET3	Transcription	date	Oct 06, 2008
title	Structure Of Ppargamma With 3-[5-Methoxy-1-(4-Methoxy- Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
authors	K.Y.J.Zhang, W.Wang
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A Fragment: Ligand Binding Domain Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28
Molecule: Steroid Receptor Coactivator 1 Chain: P Fragment: Residues 681-696 Synonym: Ncoa-1, Nuclear Receptor Coactivator 1, Src-1, Rip Protein Hin-2, Renal Carcinoma Antigen Ny-Ren-52; Ec: 2.3.1.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ncoa1, Src1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28
symmetry	Space Group: C 2 2 21	R_factor 0.179 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.853 86.671 122.135 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	ET1	enzyme	Transferase E.C.2.3.1.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Scaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent., Artis DR, Lin JJ, Zhang C, Wang W, Mehra U, Perreault M, Erbe D, Krupka HI, England BP, Arnold J, Plotnikov AN, Marimuthu A, Nguyen H, Will S, Signaevsky M, Kral J, Cantwell J, Settachatgull C, Yan DS, Fong D, Oh A, Shi S, Womack P, Powell B, Habets G, West BL, Zhang KY, Milburn MV, Vlasuk GP, Hirth KP, Nolop K, Bollag G, Ibrahim PN, Tobin JF, Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):262-7. Epub 2008 Dec 30. PMID:19116277

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3et3.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 3ET3 CSU: Contacts of Structural Units for 3ET3 Likely Quarternary Molecular Structure file(s) for 3ET3 Structure Factors (206 Kb) Retrieve 3ET3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ET3 from S2C, [Save to disk] Re-refined 3et3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ET3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ET3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ET3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3et3_P] [3et3] [3et3_A] SWISS-PROT database: [Q15788] [P37231] Domain organization of [NCOA1_HUMAN] [PPARG_HUMAN] by SWISSPFAM Domain found in 3ET3: [HOLI ] by SMART

Other resources with information on 3ET3

Community annotation for 3ET3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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