3G53 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CMO, HEM, LT1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLigand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis., Knapp JE, Pahl R, Cohen J, Nichols JC, Schulten K, Gibson QH, Srajer V, Royer WE Jr, Structure. 2009 Nov 11;17(11):1494-504. PMID:19913484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3g53.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3G53
  • CSU: Contacts of Structural Units for 3G53
  • Structure Factors (282 Kb)
  • Retrieve 3G53 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G53 from S2C, [Save to disk]
  • Re-refined 3g53 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3G53 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3G53
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G53, from MSDmotif at EBI
  • Fold representative 3g53 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g53] [3g53_A] [3g53_B]
  • SWISS-PROT database: [P02213]
  • Domain organization of [GLB1_SCAIN] by SWISSPFAM
    • Other resources with information on 3G53
  • Community annotation for 3G53 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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