3H1I Stigmatellin and antimycin bound cytochrome bc1 complex from chicken date
authors Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.I., Kim, K.K., Hung, L.W., Crofts, A.R., Berry, E.A., Kim, S.H.
compound source
symmetry
R_factor
R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.53
ligand ANY, CDL, FES, GOL, HEC, HEM, PEE, PLC, SMA, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A, O, B
  • ubiquinol-cytochrome-c reduc...


    • Q, D
  • electron transfer activity


    • S, F


    T, G


    V, I


    Primary referenceElectron transfer by domain movement in cytochrome bc1., Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts AR, Berry EA, Kim SH, Nature. 1998 Apr 16;392(6677):677-84. PMID:9565029
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (677 Kb) [Save to disk]
  • Biological Unit Coordinates (3h1i.pdb1.gz) 662 Kb
  • LPC: Ligand-Protein Contacts for 3H1I
  • CSU: Contacts of Structural Units for 3H1I
  • Likely Quarternary Molecular Structure file(s) for 3H1I
  • Structure Factors (804 Kb)
  • Retrieve 3H1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H1I from S2C, [Save to disk]
  • Re-refined 3h1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H1I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H1I, from MSDmotif at EBI
  • Fold representative 3h1i from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h1i_V] [3h1i] [3h1i_C] [3h1i_P] [3h1i_N] [3h1i_H] [3h1i_O] [3h1i_A] [3h1i_W] [3h1i_D] [3h1i_E] [3h1i_R] [3h1i_F] [3h1i_T] [3h1i_B] [3h1i_G] [3h1i_Q] [3h1i_S] [3h1i_I] [3h1i_U] [3h1i_J]
  • SWISS-PROT database: [P18946] [Q5ZLR5]
  • Domain organization of [CYB_CHICK] [UCRI_CHICK] by SWISSPFAM
    • Other resources with information on 3H1I
  • Community annotation for 3H1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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