3HPD Structure of hydroxyethylthiazole kinase protein from pyrococcus horikoshii OT3 date
authors Jeyakanthan, J., Thamotharan, S., Kuramitsu, S., Yokoyama, S., Tahirov, T.H., RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.
compound source
symmetry
R_factor
R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand PO4 enzyme
note 3HPD supersedes 1V8A
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3hpd.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 3HPD
  • CSU: Contacts of Structural Units for 3HPD
  • Likely Quarternary Molecular Structure file(s) for 3HPD
  • Structure Factors (320 Kb)
  • Retrieve 3HPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HPD from S2C, [Save to disk]
  • Re-refined 3hpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HPD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HPD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hpd_A] [3hpd]
  • SWISS-PROT database: [O58877]
  • Domain organization of [THIM_PYRHO] by SWISSPFAM
  • Other resources with information on 3HPD
  • Community annotation for 3HPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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