3IKH Crystal structure of Ribokinase in Complex with ATP and glycerol in the active site from Klebsiella pneumoniae date
authors Burley SK, New York SGX Research Center for Structural Genomics (NYSGXRC), Satyanarayana L, Swaminathan S
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ATP, GOL, MSE enzyme
Gene KPN78578 ; KPN78578 ; KPN
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (3ikh.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (3ikh.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3IKH
  • CSU: Contacts of Structural Units for 3IKH
  • Structure Factors (829 Kb)
  • Retrieve 3IKH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IKH from S2C, [Save to disk]
  • Re-refined 3ikh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IKH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IKH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IKH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ikh_D] [3ikh_B] [3ikh] [3ikh_A] [3ikh_C]
  • SWISS-PROT database: [A6T989]
  • Domain organization of [A6T989_KLEP7] by SWISSPFAM
  • Other resources with information on 3IKH
  • Community annotation for 3IKH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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