3MET Crystal structure of SGF29 in complex with H3K4me2 date
authors Bian, C.B., Xu, C., Lam, R., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Bochkarev, A., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.24273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand GOL, MLY, MSE, SO4, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation., Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J, EMBO J. 2011 Jun 17. doi: 10.1038/emboj.2011.193. PMID:21685874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3met.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3met.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3MET
  • CSU: Contacts of Structural Units for 3MET
  • Structure Factors (355 Kb)
  • Retrieve 3MET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MET from S2C, [Save to disk]
  • Re-refined 3met structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MET
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MET, from MSDmotif at EBI
  • Fold representative 3met from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3met] [3met_C] [3met_D] [3met_A] [3met_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MET
  • Community annotation for 3MET at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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