3MN8	Hydrolase	date	Apr 21, 2010
title	Structure Of Drosophila Melanogaster Carboxypeptidase D Isof Short
authors	S.Tanco, J.L.Arolas, T.Guevara, J.Lorenzo, F.X.Aviles, F.X.Gomis-
compound		source
Molecule: Lp15968p Chain: A, B, C, D Fragment: Unp Residues 1-435 Synonym: Metallocarboxypeptidase Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Svr-Rf Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: Km71h Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppiczalphaa
symmetry	Space Group: P 21 21 21	R_factor 0.211 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.020 135.700 141.710 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	GEM, GOL, NAG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure-Function Analysis of the Short Splicing Variant Carboxypeptidase Encoded by Drosophila melanogaster silver., Tanco S, Arolas JL, Guevara T, Lorenzo J, Aviles FX, Gomis-Ruth FX, J Mol Biol. 2010 Jun 25. PMID:20600119

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (518 Kb) [Save to disk] Biological Unit Coordinates (3mn8.pdb1.gz) 130 Kb Biological Unit Coordinates (3mn8.pdb2.gz) 131 Kb Biological Unit Coordinates (3mn8.pdb3.gz) 130 Kb Biological Unit Coordinates (3mn8.pdb4.gz) 131 Kb LPC: Ligand-Protein Contacts for 3MN8 CSU: Contacts of Structural Units for 3MN8 Structure Factors (403 Kb) Retrieve 3MN8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MN8 from S2C, [Save to disk] Re-refined 3mn8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MN8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MN8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MN8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mn8_A] [3mn8_D] [3mn8] [3mn8_B] [3mn8_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3MN8: [Zn_pept ] by SMART

Other resources with information on 3MN8

Community annotation for 3MN8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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