3NKP Crystal structure of mouse autotaxin in complex with 18:1-LPA date
authors Nishimasu, H., Ishitani, R., Mihara, E., Takagi, J., Aoki, J., Nureki, O.
compound source
symmetry
R_factor
R_Free 0.2222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand BMA, CA, EDO, K, MAN, NA, NAG, NKP, SCN, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • phosphodiesterase I activity...
  • scavenger receptor activity


  • Primary referenceCrystal structure of autotaxin and insight into GPCR activation by lipid mediators., Nishimasu H, Okudaira S, Hama K, Mihara E, Dohmae N, Inoue A, Ishitani R, Takagi J, Aoki J, Nureki O, Nat Struct Mol Biol. 2011 Feb;18(2):205-12. doi: 10.1038/nsmb.1998. Epub 2011 Jan, 16. PMID:21240269
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3nkp.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 3NKP
  • CSU: Contacts of Structural Units for 3NKP
  • Structure Factors (1360 Kb)
  • Retrieve 3NKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NKP from S2C, [Save to disk]
  • Re-refined 3nkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NKP in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NKP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3NKP, from MSDmotif at EBI
  • Fold representative 3nkp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nkp] [3nkp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NKP: [Endonuclease_NS] [NUC] [SO ] by SMART
  • Other resources with information on 3NKP
  • Community annotation for 3NKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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