3PDZ SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE HPTP1E date
authors Kozlov, G., Gehring, K., Ekiel, I.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 30 Modelsresolution
related structures by homologous chain: 1OZI
Primary referenceSolution structure of the PDZ2 domain from human phosphatase hPTP1E and its interactions with C-terminal peptides from the Fas receptor., Kozlov G, Gehring K, Ekiel I, Biochemistry 2000 Mar 14;39(10):2572-80. PMID:10704206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (714 Kb) [Save to disk]
  • Biological Unit Coordinates (3pdz.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 3PDZ
  • Original NMR restraints for 3PDZ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 3PDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PDZ from S2C, [Save to disk]
  • View 3PDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PDZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PDZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3pdza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pdz] [3pdz_A]
  • SWISS-PROT database: [Q12923]
  • Domain organization of [PTN13_HUMAN] by SWISSPFAM
  • Domain found in 3PDZ: [PDZ ] by SMART
  • Other resources with information on 3PDZ
  • Community annotation for 3PDZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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