3RTC Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima soaked with NAD and ATP. date
authors Shumilin, I.A., Cymborowski, M., Lesley, S.A., Minor, W.
compound source
symmetry
R_factor
R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand ATP, K, MG, NAD enzyme
Gene TM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of Unknown Protein Function Using Metabolite Cocktail Screening., Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W, Structure. 2012 Aug 28. PMID:22940582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (3rtc.pdb1.gz) 1235 Kb
  • LPC: Ligand-Protein Contacts for 3RTC
  • CSU: Contacts of Structural Units for 3RTC
  • Structure Factors (526 Kb)
  • Retrieve 3RTC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RTC from S2C, [Save to disk]
  • Re-refined 3rtc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RTC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RTC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RTC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rtc_A] [3rtc_B] [3rtc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RTC
  • Community annotation for 3RTC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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