3SDI	Structure of yeast 20S open-gate proteasome with Compound 20	date
authors	Sintchak, M.D.
compound		source
symmetry		R_factor R_Free 0.2532
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.65
ligand	3SD, MES, MG	enzyme
Gene Ontology	Chain Function Process Component 1, M A, O proteasome core complex, alp... D, R proteasome core complex, alp... F, T G, U proteasome core complex, alp... J, X endopeptidase activator acti... proteasome core complex, bet... K, Y, V, H N, 2 proteasome core complex, bet... P, B proteasome core complex, alp... Q, C S, E proteasome core complex, alp... W, I endopeptidase activator acti... proteasome core complex, bet... Z, L
Primary reference	Optimization of a series of dipeptides with a P3 threonine residue as non-covalent inhibitors of the chymotrypsin-like activity of the human 20S proteasome., Blackburn C, Barrett C, Blank JL, Bruzzese FJ, Bump N, Dick LR, Fleming P, Garcia K, Hales P, Hu Z, Jones M, Liu JX, Sappal DS, Sintchak MD, Tsu C, Gigstad KM, Bioorg Med Chem Lett. 2010 Nov 15;20(22):6581-6. Epub 2010 Sep 15. PMID:20875739

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (992 Kb) [Save to disk] Biological Unit Coordinates (3sdi.pdb1.gz) 982 Kb LPC: Ligand-Protein Contacts for 3SDI CSU: Contacts of Structural Units for 3SDI Structure Factors (4844 Kb) Retrieve 3SDI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SDI from S2C, [Save to disk] Re-refined 3sdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SDI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SDI

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3SDI, from MSDmotif at EBI Fold representative 3sdi from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sdi_N] [3sdi_S] [3sdi_T] [3sdi_V] [3sdi_D] [3sdi_Y] [3sdi_U] [3sdi_Z] [3sdi_P] [3sdi_E] [3sdi_Q] [3sdi_H] [3sdi_M] [3sdi_W] [3sdi_J] [3sdi] [3sdi_C] [3sdi_G] [3sdi_I] [3sdi_L] [3sdi_R] [3sdi_O] [3sdi_X] [3sdi_B] [3sdi_F] [3sdi_K] [3sdi_1] [3sdi_2] [3sdi_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3SDI: [Proteasome_A_N ] by SMART

Other resources with information on 3SDI

Community annotation for 3SDI at PDBWiki (http://pdbwiki.org)

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