3STJ Crystal structure of the protease + PDZ1 domain of DegQ from Escherichia coli date
authors Sawa, J., Malet, H., Krojer, T., Canellas, F., Ehrmann, M., Clausen, T.
compound source
symmetry
R_factor
R_Free 0.2120
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceMolecular adaptation of the DegQ protease to exert protein quality control in the bacterial cell envelope., Sawa J, Malet H, Krojer T, Canellas F, Ehrmann M, Clausen T, J Biol Chem. 2011 Jun 17. PMID:21685389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk]
  • Biological Unit Coordinates (3stj.pdb1.gz) 140 Kb
  • Biological Unit Coordinates (3stj.pdb2.gz) 139 Kb
  • Biological Unit Coordinates (3stj.pdb3.gz) 140 Kb
  • Biological Unit Coordinates (3stj.pdb4.gz) 140 Kb
  • Biological Unit Coordinates (3stj.pdb5.gz) 536 Kb
  • CSU: Contacts of Structural Units for 3STJ
  • Structure Factors (2710 Kb)
  • Retrieve 3STJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3STJ from S2C, [Save to disk]
  • Re-refined 3stj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3STJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3STJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3STJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3stj_X] [3stj_V] [3stj_D] [3stj_M] [3stj_K] [3stj_L] [3stj_T] [3stj_G] [3stj_O] [3stj_P] [3stj_Q] [3stj_J] [3stj_N] [3stj_U] [3stj_B] [3stj_H] [3stj_I] [3stj_A] [3stj] [3stj_R] [3stj_E] [3stj_Z] [3stj_F] [3stj_W] [3stj_S] [3stj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3STJ: [PDZ ] by SMART
  • Other resources with information on 3STJ
  • Community annotation for 3STJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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