3V7Z	Hydrolase	date	Dec 22, 2011
title	Carboxypeptidase T With Gemsa
authors	S.A.Kuznetsov, V.I.Timofeev, V.K.Akparov, I.P.Kuranova
compound		source
Molecule: Carboxypeptidase T Chain: A Ec: 3.4.17.18 Engineered: Yes		Organism_scientific: Thermoactinomyces Vulgaris Organism_taxid: 2026 Gene: Cpt Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63 2 2	R_factor 0.133 R_Free 0.152
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.890 157.890 104.195 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.61 Å
ligand	CA, GEM, GOL, NA, SO4, ZN	enzyme	Hydrolase E.C.3.4.17.18 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into the broad substrate specificity of carboxypeptidase T from Thermoactinomyces vulgaris., Akparov VKh, Timofeev VI, Khaliullin IG, Svedas V, Chestukhina GG, Kuranova IP, FEBS J. 2015 Apr;282(7):1214-24. doi: 10.1111/febs.13210. Epub 2015 Feb 18. PMID:25619204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (3v7z.pdb1.gz) 133 Kb Biological Unit Coordinates (3v7z.pdb2.gz) 781 Kb LPC: Ligand-Protein Contacts for 3V7Z CSU: Contacts of Structural Units for 3V7Z Structure Factors (1362 Kb) Retrieve 3V7Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V7Z from S2C, [Save to disk] Re-refined 3v7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V7Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V7Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V7Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v7z] [3v7z_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V7Z: [Zn_pept ] by SMART

Other resources with information on 3V7Z

Community annotation for 3V7Z at PDBWiki (http://pdbwiki.org)

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