4B3V Viral Protein date Jul 26, 2012
title Crystal Structure Of The Rubella Virus Glycoprotein E1 In It Fusion Form Crystallized In Presence Of 20mm Of Calcium Ace
authors M.C.Vaney, R.M.Dubois, M.A.Tortorici, F.A.Rey
compound source
Molecule: E1 Envelope Glycoprotein
Chain: A, B, C
Fragment: Ectodomain, Residues 583-1018
Synonym: Envelope Glycoprotein E1
Engineered: Yes
Organism_scientific: Rubella Virus
Organism_taxid: 11041
Strain: M33
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmt Modified Invitrogen
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.272 126.163 129.375 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand ACT, CA, GOL, NA, NAG, NGA, PEG, PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceFunctional and evolutionary insight from the crystal structure of rubella virus protein E1., Dubois RM, Vaney MC, Tortorici MA, Kurdi RA, Barba-Spaeth G, Krey T, Rey FA, Nature. 2013 Jan 6. doi: 10.1038/nature11741. PMID:23292515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (430 Kb) [Save to disk]
  • Biological Unit Coordinates (4b3v.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (4b3v.pdb2.gz) 143 Kb
  • Biological Unit Coordinates (4b3v.pdb3.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4B3V
  • CSU: Contacts of Structural Units for 4B3V
  • Structure Factors (2582 Kb)
  • Retrieve 4B3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B3V from S2C, [Save to disk]
  • Re-refined 4b3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B3V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B3V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b3v] [4b3v_A] [4b3v_C] [4b3v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B3V
  • Community annotation for 4B3V at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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