4HAD Crystal structure of probable oxidoreductase protein from Rhizobium etli CFN 42 date 2012-09-26
authors Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.2056
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand MSE, NA enzyme
Gene RHE
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • oxidoreductase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]
  • Biological Unit Coordinates (4had.pdb1.gz) 435 Kb
  • LPC: Ligand-Protein Contacts for 4HAD
  • CSU: Contacts of Structural Units for 4HAD
  • Structure Factors (2104 Kb)
  • Retrieve 4HAD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HAD from S2C, [Save to disk]
  • Re-refined 4had structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HAD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HAD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4had] [4had_A] [4had_C] [4had_D] [4had_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HAD
  • Community annotation for 4HAD at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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